PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04658.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 274aa    MW: 30982 Da    PI: 8.2978
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04658.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv+++++ Gg+ +W++ ++  g+ R++k+c++rw +yl
       KHN04658.1 14 KGSWTAEEDEILVNYINKNGGHgSWRSLPKLAGLLRCGKSCRLRWTNYL 62
                     799******************9***********99************97 PP

2Myb_DNA-binding48.81.6e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++l+++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
       KHN04658.1  68 RGSFTLEEEKLIIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-22565IPR009057Homeodomain-like
PROSITE profilePS5129415.67962IPR017930Myb domain
SuperFamilySSF466894.49E-2810109IPR009057Homeodomain-like
SMARTSM007175.3E-121364IPR001005SANT/Myb domain
PfamPF002491.4E-141462IPR001005SANT/Myb domain
CDDcd001677.51E-81662No hitNo description
PROSITE profilePS5129424.45163117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2566118IPR009057Homeodomain-like
SMARTSM007172.1E-1467115IPR001005SANT/Myb domain
PfamPF002491.8E-1468113IPR001005SANT/Myb domain
CDDcd001671.42E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRKPCCDKM GLKKGSWTAE EDEILVNYIN KNGGHGSWRS LPKLAGLLRC GKSCRLRWTN  60
YLRPDIKRGS FTLEEEKLII QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLICM  120
GLDPQTHQPL ASPHNLNDKA HASSTSTRHM AQWETARLEA EARLSREPHF NNKTDSDYFL  180
RIWNSEVGES FRDVHKSESS IKCESLSATT TTTTTDLASS TPASIVKKEF LWGVKKIVSY  240
SSSSSSELEH DSCDTSLQFL LDFPINNDMS FLEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261211725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-100AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583311.10.0PREDICTED: myb-related protein 308-like
SwissprotQ50EX61e-65ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0B2PAE20.0A0A0B2PAE2_GLYSO; Protein ODORANT1
TrEMBLI1KID30.0I1KID3_SOYBN; Uncharacterized protein
STRINGGLYMA07G07960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-115myb domain protein 17
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]